PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_617DB5FC6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 65aa    MW: 7384.54 Da    PI: 10.9739
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_617DB5FC6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.22e-113444990
                   FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                           e+++r+ ++tr+gC+a+++vk  + +++++++l ++HnH l+
  Traes_2DL_617DB5FC6.1  3 ERKKRNVKVTRCGCNAHIVVKWCSGNTYNISSLIEHHNHGLV 44
                           6889999********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-9244IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
SNERKKRNVK VTRCGCNAHI VVKWCSGNTY NISSLIEHHN HGLVSPDKVI KSKRRVSEKA  60
KNKLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700007.11e-15PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5BV466e-40W5BV46_WHEAT; Uncharacterized protein
STRINGMLOC_19788.22e-32(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15006915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-08FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]